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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42966856_42967510_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42966856 - 42967510
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGTGTAGA
5'SS Class:
major
3'SS Sequence:
TTGCTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTCAT
U12 Branch Point Sequence:
TTTGCTTTATAC
Flanking Amino Acid:
EKLYQFIEPFEEKFAQAVCF
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.1
39.8
Major BPS
68.2
0.45
1.1
69.4
37.7
Major PPT
81.1
0.7
0.9
76.6
36.7
Minor 5ss
36.2
-1.6
2.6
42.2
44.7
Minor BPS
57.2
0.21
1.8
71.15
40.4

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961