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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42968629_42969319_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42968629 - 42969319
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTC
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATGAACA
Flanking Amino Acid:
IEVAKSKIHQYKVRAYIQMK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.8
0.49
1
66.4
43.3
Minor 5ss
35.9
-1.6
3.5
51.5
45.7
Minor BPS
60.4
0.32
1.9
79.2
36.1

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961