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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42969404_42970385_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42969404 - 42970385
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTCTCCTTCACA
Flanking Amino Acid:
IKSVMNTAGNSAPSLFLKSN
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.3
0.77
0.7
79.4
26.1
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
74.9
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961