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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42974840_42975437_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42974840 - 42975437
Intron Length:
598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TGGTACTCACCA
Flanking Amino Acid:
ASQSIQNVVYNDGQSSAIPV
Intron Amino Acid Position:
446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
80.6
0.69
0.9
77.4
36.9
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
47.7
-0.1
2
61.56
44.1

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961