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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42975615_42977088_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42975615 - 42977088
Intron Length:
1474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCAGA
5'SS Class:
major
3'SS Sequence:
GTTTTTATTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AATAATTTAATA
Flanking Amino Acid:
AENSESSEACSNKSHEGDKF
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.8
41.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.9
0.72
0.8
74.7
40
Minor 5ss
38.8
-1.3
2.8
49.6
46.2
Minor BPS
57.9
0.24
1.5
64.87
35

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961