About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42982651_42984002_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
42982651 - 42984002
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTACCTGACCC
Flanking Amino Acid:
LQQPKLSGSLKFLGHLYAAE
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
55.7
0.16
1.8
69.24
41.6

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961