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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42984872_42984964_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
42984872 - 42984964
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTTCAATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTCAATT
Flanking Amino Acid:
DKGENEAMESSGKQTPQCYP
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.6
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.7
0.69
0.8
74.5
33.8
Minor 5ss
39.6
-1.2
2.7
53.3
37.4
Minor BPS
77.2
0.93
1.4
92.06
30.7

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961