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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42985093_42986951_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42985093 - 42986951
Intron Length:
1859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCCATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAA
U12 Branch Point Sequence:
TCTTTTTCCATA
Flanking Amino Acid:
YDKARKCLHQAASLIHPKEI
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
69.9
0.49
1
61.3
37
Major PPT
71
0.47
1
77.1
30.5
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
47.7
-0.1
1.9
62.08
39.4

Associated Gene:

Gene:
CNOT10
Ensembl Gene ID:
ENSAPLG00000008609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008997
42960964 - 42988924
27961