Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_42998859_43001551_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

42998859 - 43001551

Intron Length:

2693

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCCCCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

CTCTCCCCCAAG

Flanking Amino Acid:

EERECELLWKVEKIRQVKAK

Intron Amino Acid Position:

426

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.1

1.13

0.6

93.5

20.3

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

62.7

0.29

30.1

Minor 5ss

38.4

-1.3

2.8

52.3

44.3

Minor BPS

39.3

-0.9

2.3

45.33

46.6

Associated Gene:

Gene:

TRIM71

Ensembl Gene ID:

ENSAPLG00000008589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008934

42997407 - 43051311

53905