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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43011304_43049543_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43011304 - 43049543
Intron Length:
38240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
AAGTCTTCACCA
Flanking Amino Acid:
ASYCQHHDDEVLHFYCDTCS
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
77.5
0.68
1
79.6
33
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
49
-0
1.8
58.99
40.9

Associated Gene:

Gene:
TRIM71
Ensembl Gene ID:
ENSAPLG00000008589
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008934
42997407 - 43051311
53905