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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4304316_4314142_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4304316 - 4314142
Intron Length:
9827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACGTCTTTATCT
Flanking Amino Acid:
SVFYCFLNGEVSLFDLIGLK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.7
0.8
0.8
77.8
35.6
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
62.8
0.48
1.6
73.68
43.7

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022712
4163283 - 4323068
159786
ENSAPLT00000011655
4211077 - 4323068
111992