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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4304316_4321896_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4304316 - 4321896
Intron Length:
17581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCTCTCACC
Flanking Amino Acid:
SVFYCFLNGEVRSAARKRWH
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.9
28.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.7
0.69
0.8
74.8
34.8
Minor 5ss
37.5
-1.4
2.8
51.6
44.9
Minor BPS
59.8
0.29
2.1
78.9
36.8

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025127
4163283 - 4323068
159786