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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43101958_43104010_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43101958 - 43104010
Intron Length:
2053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTGGT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTATTT
Flanking Amino Acid:
VAVNQKLPSDRLCLEKILLQ
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
76.2
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.5
0.53
1
74.1
40.8
Minor 5ss
40
-1.1
3.3
58.7
45.8
Minor BPS
58
0.33
1.8
79.06
37.3

Associated Gene:

Gene:
TCAIM
Ensembl Gene ID:
ENSAPLG00000008202
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008542
43086288 - 43104071
17784