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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43113321_43115017_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43113321 - 43115017
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTC
5'SS Class:
major
3'SS Sequence:
AATTCACTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
CATTGCATAATT
Flanking Amino Acid:
TTQSLQIILKRCEDQTVQNN
Intron Amino Acid Position:
1333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
73.5
35.7
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
75
0.56
0.9
66.7
38.8
Minor 5ss
39.7
-1.2
3.1
52.8
44.4
Minor BPS
53.3
0.18
2.1
73.88
43.1

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343