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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43115202_43115478_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43115202 - 43115478
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CATTTACTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTAATCTTAATT
Flanking Amino Acid:
LWSKARTYYKTALSLGCYPP
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76
0.59
0.9
69.3
35.6
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
69.7
0.7
1.2
78.21
37.9

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343