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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43123159_43124696_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43123159 - 43124696
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AGAAAAATAATA
Flanking Amino Acid:
GVPFCDFADAVITNPTCNEA
Intron Amino Acid Position:
1060

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
91.2
0.93
0.6
85.4
29.4
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
41.1
-0.6
1.8
48.27
34.4

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343