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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43124872_43126158_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43124872 - 43126158
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGT
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTGCTCATATTT
Flanking Amino Acid:
DFNLIMAEIQHCKEKNDWSK
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
70.6
42.2
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.7
0.67
0.8
75.7
32.9
Minor 5ss
37.4
-1.4
3.5
56
48.2
Minor BPS
48.6
-0
1.8
69.77
41.5

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343