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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43127825_43128073_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43127825 - 43128073
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGATATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
GCATGCTTACTT
Flanking Amino Acid:
VPTLISTFRKLVDAGMFLEF
Intron Amino Acid Position:
941

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
80.4
0.69
0.9
73.6
40.4
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
48.9
-0
2
64.99
45.8

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343