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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43128167_43128371_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43128167 - 43128371
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTCAC
5'SS Class:
major
3'SS Sequence:
GTCTAAATTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTGTCTAAATT
Flanking Amino Acid:
LRVAVQINILPAVDVLLKVF
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65
41.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
66.7
0.38
1
59
40.6
Minor 5ss
33.3
-1.9
3.2
40.4
40.2
Minor BPS
64.3
0.53
1.7
82.74
39.5

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343