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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43128524_43129564_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43128524 - 43129564
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATT
Flanking Amino Acid:
INESGLLKRAVQIFVRYYRE
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
84.2
0.77
0.8
81.3
35.7
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
71.7
0.76
1.1
82.37
32.8

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343