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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43129629_43134244_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43129629 - 43134244
Intron Length:
4616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
RHVPEQRHEKICMEILKTYI
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
83.6
0.76
0.7
77.2
31.6
Minor 5ss
31
-2.2
3.2
40
45.7
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343