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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43134979_43137294_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43134979 - 43137294
Intron Length:
2316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCGTAT
5'SS Class:
weak_major
3'SS Sequence:
TGTACATTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCATACTAATT
Flanking Amino Acid:
ESTVLKPRKNGKDLSLPLLN
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.2
0.29
1.2
61
40
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
78.1
0.63
0.9
74
40.5
Minor 5ss
50.7
0.03
2.9
69.4
43.7
Minor BPS
48.2
-0
1.9
70.14
40.9

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343