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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43140643_43142160_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43140643 - 43142160
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTACGTTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TATAAAGTAATG
Flanking Amino Acid:
AGNSQDLAIKATDIKTHNSS
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
34.4
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
77.4
0.62
1
73.2
41.9
Minor 5ss
40.9
-1
3.4
58.3
46.6
Minor BPS
41.8
-0.7
2.3
51.76
42.4

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343