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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4314209_4321896_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
4314209 - 4321896
Intron Length:
7688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTCTCTCACC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
79
35.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80.7
0.69
0.8
74.8
34.8
Minor 5ss
41.6
-0.9
2.8
51.4
39.2
Minor BPS
59.8
0.29
2.1
78.9
36.8

Associated Gene:

Gene:
CRHR2
Ensembl Gene ID:
ENSAPLG00000011160
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022712
4163283 - 4323068
159786
ENSAPLT00000011655
4211077 - 4323068
111992