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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43142229_43146132_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43142229 - 43146132
Intron Length:
3904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTTGTTCAAAA
Flanking Amino Acid:
ENRGSVNANFRDLTVQESGM
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
68
0.41
1.1
64
40.7
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
53.4
0.1
2
72.74
39.3

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343