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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43148594_43150101_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43148594 - 43150101
Intron Length:
1508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTCTTTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.1
0.61
1
74.8
39
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
78.7
0.76
1.2
76.34
35.4

Associated Gene:

Gene:
TOPAZ1
Ensembl Gene ID:
ENSAPLG00000026179
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044724
43113062 - 43150404
37343