Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43209511_43243339_R

Intron Information:

Intron Rank:

131771

Intron Class:

major

Intron Phase:

Intron Coordinates:

43209511 - 43243339

Intron Length:

33829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TTTCCTTATCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

TTTTCCTTATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.2

0.48

1.3

69.7

41.3

Major BPS

78.8

0.72

67.9

40.1

Major PPT

80.1

0.68

0.8

74.1

35.7

Minor 5ss

37.9

-1.4

2.6

42.8

36.9

Minor BPS

85.6

1.19

1.4

100.1

28.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018102

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047515

43208662 - 43243957

35296