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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43281866_43286286_F

Intron Information:

Intron Rank:
129256
Intron Class:
major
Intron Phase:
Intron Coordinates:
43281866 - 43286286
Intron Length:
4421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAGT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
ATACCCTTGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1.2
73.9
42.7
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
37.5
-1.4
2.8
50
45.9
Minor BPS
72.7
0.7
1.2
74.91
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037942
43280994 - 43291534
10541