About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43286448_43290149_F

Intron Information:

Intron Rank:
129257
Intron Class:
major
Intron Phase:
Intron Coordinates:
43286448 - 43290149
Intron Length:
3702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTCTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.8
0.67
1
76.5
37
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
81
0.97
1
84.56
27.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019539
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037942
43280994 - 43291534
10541