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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43322991_43324240_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43322991 - 43324240
Intron Length:
1250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
ATTGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGCTCAGGAACT
Flanking Amino Acid:
GDWMMNPSLTKLGWLFSWLP
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77.7
33.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
76.4
0.59
1
69.6
41
Minor 5ss
42.2
-0.9
3.2
57.4
41.7
Minor BPS
46.8
-0.1
2.3
70.98
45.3

Associated Gene:

Gene:
ABHD5
Ensembl Gene ID:
ENSAPLG00000007890
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008203
43312442 - 43324275
11834