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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43363660_43364699_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43363660 - 43364699
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACTTTAAAG
Flanking Amino Acid:
KRIVDKKANGGAQLLIKPLV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.4
0.64
1
78.9
33.1
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
69.7
0.48
1.5
73.52
38.7

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026257
43363507 - 43474352
110846
ENSAPLT00000024257
43363507 - 43474352
110846
ENSAPLT00000040820
43363521 - 43386071
22551
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000039091
43363507 - 43445440
81934
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000032752
43363507 - 43453048
89542