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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43366113_43367507_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43366113 - 43367507
Intron Length:
1395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
AGTACTAGAACT
Flanking Amino Acid:
QAKLYPGKSIVRRLLTNGIL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
88.6
0.87
0.6
82
30
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
49.6
0.05
1.8
70.39
39.7

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000040820
43363521 - 43386071
22551
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000039091
43363507 - 43445440
81934
ENSAPLT00000032752
43363507 - 43453048
89542
ENSAPLT00000026257
43363507 - 43474352
110846