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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43370671_43372374_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43370671 - 43372374
Intron Length:
1704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTAATGTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTACTAATG
Flanking Amino Acid:
RYAAEFLTSWENHRLESSYQ
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.4
0.5
0.9
69.5
41.3
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
49.3
-0.1
2
61.82
40

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024257
43363507 - 43474352
110846
ENSAPLT00000040820
43363521 - 43386071
22551
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000039091
43363507 - 43445440
81934
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000032752
43363507 - 43453048
89542
ENSAPLT00000026257
43363507 - 43474352
110846