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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43373660_43375048_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43373660 - 43375048
Intron Length:
1389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTACTT
Flanking Amino Acid:
VLFDMKLLRQSLATLLITSQ
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.7
0.67
1
84.8
28.9
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
70.1
0.71
1.5
86.64
33.8

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000032752
43363507 - 43453048
89542
ENSAPLT00000026257
43363507 - 43474352
110846
ENSAPLT00000024257
43363507 - 43474352
110846
ENSAPLT00000040820
43363521 - 43386071
22551
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000039091
43363507 - 43445440
81934