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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43375232_43380103_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43375232 - 43380103
Intron Length:
4872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTGA
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTAAAA
U12 Branch Point Sequence:
TTGTGGGTAAAA
Flanking Amino Acid:
NSEKEMGTYLGTFDDYLELF
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.9
39.9
Major BPS
46.1
-0.2
1.3
51
41.5
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
38.6
-1.3
3
46.8
43.8
Minor BPS
40.2
-0.7
2.8
59.87
46.1

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026257
43363507 - 43474352
110846
ENSAPLT00000024257
43363507 - 43474352
110846
ENSAPLT00000040820
43363521 - 43386071
22551
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000039091
43363507 - 43445440
81934
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000032752
43363507 - 43453048
89542