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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43380296_43382686_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43380296 - 43382686
Intron Length:
2391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATGGCCATAACT
Flanking Amino Acid:
EPTANIGVWQLAFETMSVIS
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
63.4
0.5
1.8
79.39
42.5

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024257
43363507 - 43474352
110846
ENSAPLT00000040820
43363521 - 43386071
22551
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000039091
43363507 - 43445440
81934
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000032752
43363507 - 43453048
89542
ENSAPLT00000026257
43363507 - 43474352
110846