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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43382816_43438618_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43382816 - 43438618
Intron Length:
55803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTTCGTTTTACT
Flanking Amino Acid:
DLILTVALVEHLLLAIKFVM
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
56.2
0.28
2.1
81.46
40.1

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024257
43363507 - 43474352
110846
ENSAPLT00000023540
43363507 - 43474336
110830
ENSAPLT00000039091
43363507 - 43445440
81934
ENSAPLT00000007915
43363521 - 43450876
87356
ENSAPLT00000032752
43363507 - 43453048
89542
ENSAPLT00000026257
43363507 - 43474352
110846