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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43438736_43465671_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43438736 - 43465671
Intron Length:
26936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
GGGCTGTGAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
AATTTTTTTACT
Flanking Amino Acid:
FESLEALKQQIIAEIPQEES
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
49.4
-0
1.1
42.8
42.2
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
64
0.52
1.6
78.76
37.6

Associated Gene:

Gene:
ANO10
Ensembl Gene ID:
ENSAPLG00000007607
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023540
43363507 - 43474336
110830