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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43482621_43482773_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43482621 - 43482773
Intron Length:
153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGCTGG
5'SS Class:
major
3'SS Sequence:
TGTCCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATCCTCAAAA
Flanking Amino Acid:
STNNTSGSTRSVKVQEKSTW
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.9
44.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.8
0.78
0.8
76.7
37.4
Minor 5ss
36.7
-1.5
3.2
46.9
48.5
Minor BPS
62.8
0.4
1.7
71.42
39.7

Associated Gene:

Gene:
SNRK
Ensembl Gene ID:
ENSAPLG00000012638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013163
43482350 - 43508755
26406