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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43507338_43508656_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43507338 - 43508656
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTACATAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
52.4
0.05
1.8
64.09
41.7

Associated Gene:

Gene:
SNRK
Ensembl Gene ID:
ENSAPLG00000012638
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028922
43481474 - 43508755
27282
ENSAPLT00000013163
43482350 - 43508755
26406