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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43536008_43548968_R

Intron Information:

Intron Rank:
140647
Intron Class:
major
Intron Phase:
Intron Coordinates:
43536008 - 43548968
Intron Length:
12961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCTAAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.6
0.89
0.6
89.2
19.8
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
60.5
0.41
1.9
81.83
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023026
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045155
43535896 - 43552165
16270