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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43549066_43551679_R

Intron Information:

Intron Rank:
140648
Intron Class:
major
Intron Phase:
Intron Coordinates:
43549066 - 43551679
Intron Length:
2614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCAATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TCTCCCTGGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
82.2
0.72
0.9
75.8
37.7
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
54.3
0.13
1.7
66.14
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023026
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045155
43535896 - 43552165
16270