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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43576098_43577141_F

Intron Information:

Intron Rank:
132765
Intron Class:
major
Intron Phase:
Intron Coordinates:
43576098 - 43577141
Intron Length:
1044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
TGTGACATGAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
86.8
0.83
0.6
85.6
21.5
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
43.3
-0.5
2.1
57.17
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046630
43576000 - 43583518
7519