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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43577242_43581705_F

Intron Information:

Intron Rank:
132766
Intron Class:
major
Intron Phase:
Intron Coordinates:
43577242 - 43581705
Intron Length:
4464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CTGTCGAGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
40.9
-0.7
2.3
53.39
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021366
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046630
43576000 - 43583518
7519