Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43588872_43588961_F

Intron Information:

Intron Rank:

148212

Intron Class:

major

Intron Phase:

Intron Coordinates:

43588872 - 43588961

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCCGGG

5'SS Class:

major

3'SS Sequence:

TTCTTTCTGGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGCGAT

U12 Branch Point Sequence:

TTTTTCTTTCCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.31

1.3

48.9

47.7

Major BPS

49.9

-0

1.4

49.9

45.3

Major PPT

78.3

0.64

0.9

77.2

31.6

Minor 5ss

39.9

-1.1

3.5

55.4

48.8

Minor BPS

47.9

-0

3.6

87.49

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029810

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034888

43588642 - 43593785

5144