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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43589093_43593713_F

Intron Information:

Intron Rank:
148213
Intron Class:
major
Intron Phase:
Intron Coordinates:
43589093 - 43593713
Intron Length:
4621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGATGCTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
68.8
42.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.9
0.72
0.8
77
31.5
Minor 5ss
46
-0.4
3.2
63.6
48.1
Minor BPS
63.1
0.49
1.9
79.31
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029810
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034888
43588642 - 43593785
5144