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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4360033_4360907_F

Intron Information:

Intron Rank:
147916
Intron Class:
major
Intron Phase:
Intron Coordinates:
4360033 - 4360907
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TTGTCTCCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.4
38.7
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
74.9
0.56
0.9
70.6
35
Minor 5ss
27.7
-2.6
3
34.2
42
Minor BPS
56.2
0.19
1.9
72.31
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029625
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024792
4359750 - 4361656
1907