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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43609187_43609378_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43609187 - 43609378
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
GAATCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCATCCTGAATC
Flanking Amino Acid:
LNFRLLQGIDSFPEAAVAVL
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
70.3
0.46
1
65.8
44.8
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
61.9
0.35
1.5
63.87
42

Associated Gene:

Gene:
GASK1A
Ensembl Gene ID:
ENSAPLG00000022533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020297
43608979 - 43612728
3750