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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43609808_43612245_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43609808 - 43612245
Intron Length:
2438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
ATATCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
GACCCCAAAATA
Flanking Amino Acid:
RLALFDFLLQVHDRLDRYCC
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
72.6
0.51
0.9
66
35.1
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
45
-0.3
1.9
51.81
39.8

Associated Gene:

Gene:
GASK1A
Ensembl Gene ID:
ENSAPLG00000022533
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020297
43608979 - 43612728
3750