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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_43625264_43625630_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43625264 - 43625630
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTTTTCCAAACA
Flanking Amino Acid:
WAKKIEAREKKAKMTDFDRY
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
78.8
36.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
78.1
0.63
0.9
74.9
33.8
Minor 5ss
32.9
-2
3.4
47.9
47.8
Minor BPS
60.6
0.33
2
79.54
36.7

Associated Gene:

Gene:
RPL14
Ensembl Gene ID:
ENSAPLG00000003884
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003979
43625198 - 43626968
1771